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The Ocean Biogeographic Information System (OBIS):An On-line,Worldwide Atlas for Accessing,Modeling and Mapping Marine Biological Data in a Multidimensional Geographic Context
The Ocean Biogeographic Information System (OBIS) On-line Worldwide Atlas for Accessing Modeling and Mapping Marine Biological Data Multidimensional Geographic Context
2015/8/5
OBIS is a component of the Census of Marine Life (CoML) an international program to assess and explain the diversity, distribution, and abundance of marine life. There is no adequate system for retrie...
Modeling and Prediction of Marine Microbial Populations in the Genomic Era
Genomic Era Microbial Populations
2015/7/22
The articles in this special issue attest to the fact that we are in the early stages of a scientific revolution in marine microbiology that is being fueled by vast quantities of new information deriv...
Numerical modeling of coastal ocean circulation underwent a sea change during the CoOP years. In the late 1980s and early 1990s, when CoOP was conceived and implemented, most of the focus in modeling ...
Modeling Food Web Interactions in Benthic Deep-Sea Ecosystems
Deep-Sea Ecosystems Web Interactions
2015/7/3
Deep-sea benthic systems are notoriously difficult to sample. Even more than for other benthic systems, many
flows among biological groups cannot be directly measured, and data sets remain incomplete...
Quantifying denitrification in rippled permeable sands through combined flume experiments and modeling
Quantifying denitrification rippled permeable sands combined flume experiments modeling
2014/4/4
We measured denitrification in permeable sediments in a sealed flume tank with environmentally representative fluid flow and solute transport behavior using novel measurements. Numerical flow and reac...
Applying a semantic information Petri Net modeling method to AUV systems design
autonomous underwater vehicle(AUV) colored Petri Net modeling language(CPNML) substitution transition reachable tree
2011/9/14
This paper informally introduces colored object-oriented Petri Nets(COOPN) with the application of the AUV system.According to the characteristic of the AUV system’s running environment,the object-ori...
Modeling flow in coral communities with and without waves: A synthesis of porous media and canopy flow approaches
Modeling flow in coral communities with and without waves: A synthesis of porous media and canopy flow approaches
2014/4/21
Both canopy flow and porous media theories have been developed independent of one another to predict flow through submerged porous structures. These approaches are very similar, albeit with some key d...
Synergistic applications of autonomous underwater vehicles and the regional ocean modeling system in coastal ocean forecasting
Synergistic applications of autonomous underwater vehicles and the regional ocean modeling system in coastal ocean forecasting
2014/5/16
The potential for using synergistic combinations of measurements from autonomous underwater vehicles (AUVs) and output from three-dimensional numerical models for studying the central California coast...
A framework for developing ecosystem-specific nutrient criteria: Integrating biological thresholds with predictive modeling
ecosystem-specific nutrient criteria Integrating biological thresholds predictive modeling
2014/4/21
We present a novel ecosystem-specific framework for developing nutrientcriteria from biological thresholds and predictive modeling (BTPM) and an application of this framework to lakes in Michigan, U.S...
Agent-based modeling of the complex life cycle of a cyanobacterium (Anabaena)ina shallow reservoir
Agent-based modeling complex life cycle cyanobacterium a shallow reservoir
2014/4/18
The cyanobacteriumAnabaena flos-aquaeand many other phytoplankton species have a complex life cycle that includes a resting stage (akinete). We present a new agent-based (also known as individual-base...
A biodiversity-inspired approach to aquatic ecosystem modeling
biodiversity-inspired approach aquatic ecosystem
2014/4/22
Current aquatic ecosystem models accommodate increasing amounts of physiological detail, but marginalize the role of biodiversity by aggregating multitudes of different species. We propose that at pre...
Dispersal of barnacle larvae along the central California coast: A modeling study
barnacle larvae central California coast A modeling study
2014/4/22
To investigate the biological and physical mechanisms affecting larval dispersal, we embedded a model of Balanus glandula larval development and behavior into physical circulation fields of waters alo...
The fate of bacterial carbon in an intertidal sediment: Modeling an in situ isotope tracer experiment
The fate of bacterial carbon an intertidal sediment: Modeling an situ isotope tracer experiment
2014/5/4
We report the results of an integrated modeling and in situ isotope tracer experiment study examining the fate of bacterial carbon in an intertidal sediment. 13C-glucose was injected into the upper 10...
Consequences of large temporal variability of zooplankton d15N for modeling fish trophic position and variation
Consequences of large temporal variability of zooplankton d15N modeling fish trophic position variation
2014/5/13
We use a temporal integration model (TIM) to determine how estimates of trophic variation, using δ15N, depend on consumer growth dynamics and temporal isotopic variation (δ15N) of food sources. Consum...
The internal wave field in Sau reservoir: Observation and modeling of a third vertical mode
The internal wave field Sau reservoir Observation and modeling third vertical mode
2014/5/9
Water withdrawal from Mediterranean reservoirs in summer is usually very high. Because of this, stratification is often continuous and far from the typical two-layered structure, favoring the excitati...