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Identification of candidate genes for key fibre-related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions
海岛棉 基因组组分 遗传作图群体
2024/5/17
该研究以渗入了海岛棉基因组组分的优质种质鲁原343为亲本，构建了包含239个重组自交系的遗传作图群体，利用SLAF标签构建了高密度遗传图谱，结合7个环境的表型数据，共鉴定104个纤维品质和产量性状QTLs，其中66个QTL共定位于19个QTL簇中。该研究团队通过进一步对鲁原343进行全基因组深度测序，解析鲁原343的遗传组成及其对纤维相关性状的遗传贡献，发现来自G. hirsutum races（...
Transcriptome and QTL analyses reveal candidate genes for fiber quality in Upland cotton
棉花 纤维发育 QTL 转录组 表达基因
2024/5/17
本研究基于前期得到的1个F2群体、1个重组自交系群体和2个永久回交群体得到了15个在多群体或者多年分稳定检测的QTL位点。基于转录组测序，在两亲本间发育10天的纤维进行差异基因鉴定，得到了780个差异基因。通过对QTL和转录组结果联合分析，在9个QTL区间内得到31个基因，其中有9个在纤维中优异表达的基因。在这9个基因中，有7个基因在纤维伸长期高量表达，2个基因在纤维次生壁加厚期高量表达。该研究为...
Detection of candidate genes and development of KASP markers for Verticillium wilt resistance by combining genome wide association study, QTL seq and transcriptome sequencing in cotton
棉花 抗黄萎病性状 关联群体 遗传分离群体
2024/4/16
构建了棉花抗黄萎病性状的关联群体和遗传分离群体，联合利用全基因组关联分析(GWAS)、QTL- Seq和转录组测序开展了棉花抗黄萎病基因发掘与KASP标记开发研究,获得了5个主效抗黄萎病QTL的候选基因区间，开发出10个可以用于陆地棉抗病性标记辅助选择育种的KASP标记，同时鉴定出8个抗黄萎病候选基因，这些基因主要参与植物基础免疫反应及广谱抗病性，推测基础免疫反应相关基因在抗、感品种间的gDNA&...
The Candidate Genes Underlying a Stably Expressed QTL for Low Temperature Germinability in Rice (Oryza sativa L.)
Rice Low temperature germinability Quantitative trait locus Candidate gene Genomewide association study
2023/4/21
Background: Direct seeding is an efficient cultivation technique in rice. However, poor low temperature germinability (LTG) of modern rice cultivars limits its application. Identifying the genes assoc...
Polymorphism, linkage mapping, and association analysis with carcass traits of four porcine candidate genes selected from gene-expression profiles of Czech Large White and Wild Boar muscles
pig single nucleotide polymorphism DNA markers
2015/7/3
Genes that are expressed in skeletal muscles may play a role in prenatal muscle development and postnatal muscle growth and can be considered candidates for economically important traits. Four porcine...
Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs
entropy analysis pork meat content SNP
2015/7/3
The objective of the paper was to classify 50 SNPs (from 17 chromosomes) according to their contribution to the meatness of 293 boars of two breeds (Polish Landrace and Polish Large White) using entro...
Association analysis of seven candidate genes with performance traits in Czech Large White pigs
pig genotyping SNP performance trait estimated breeding value (EBV) Czech Large White
2015/6/9
In this study association analyses were performed between genes tagged SNP (IGF2, NAMPT, DGAT1, MYF4, MC3R, MC4R and MYOD1), performance traits (backfat thickness, lean meat content, average daily gai...